GPflow Documentation

Intro:

• Introduction
  • Install
  • Getting Started
  • What’s the difference between GPy and GPflow?
  • What models are implemented?
  • Contributing
  • Citing GPflow
  • References
  • Acknowledgements
• GPflow manual
  • Basics
  • Understanding
  • Advanced needs
  • Tailored models
  • Theoretical notes
  • References
• How GPflow relates to TensorFlow: tips & tricks
  • 1. Computation time increases when I create GPflow objects
  • 2. I want to reuse a model on different data
  • 3. I want to use external TensorFlow tensors and pass them to a GPflow model
  • 4. I want to share parameters between GPflow objects
  • 5. Optimising my model repeatedly slows down the computation time
  • 6. When I try to read parameter values, I’m getting stale values
  • 7. I want to save and load a GPflow model
• GPflow with TF2.0
  • Small steps big changes

Examples:

• Notebooks
• Derivations

API:

• gpflow.Parameter
• gpflow.default_float
• gpflow.default_jitter
• gpflow.base
  • gpflow.base.Module
• gpflow.conditionals
  • gpflow.conditionals.base_conditional
  • gpflow.conditionals.conditional
  • gpflow.conditionals.sample_conditional
  • gpflow.conditionals.uncertain_conditional
  • gpflow.conditionals.mo_conditionals
    • gpflow.conditionals.mo_conditionals.coregionalization_conditional
    • gpflow.conditionals.mo_conditionals.expand_independent_outputs
    • gpflow.conditionals.mo_conditionals.fallback_independent_latent_conditional
    • gpflow.conditionals.mo_conditionals.fully_correlated_conditional
    • gpflow.conditionals.mo_conditionals.independent_interdomain_conditional
    • gpflow.conditionals.mo_conditionals.inducing_point_conditional
    • gpflow.conditionals.mo_conditionals.mix_latent_gp
    • gpflow.conditionals.mo_conditionals.rollaxis_left
    • gpflow.conditionals.mo_conditionals.separate_independent_conditional
    • gpflow.conditionals.mo_conditionals.shared_independent_conditional
  • gpflow.conditionals.util
    • gpflow.conditionals.util.fully_correlated_conditional_repeat
    • gpflow.conditionals.util.leading_transpose
    • gpflow.conditionals.util.rollaxis_right
    • gpflow.conditionals.util.sample_mvn
• gpflow.config
  • gpflow.config.Config
  • gpflow.config.as_context
  • gpflow.config.config
  • gpflow.config.default_int
  • gpflow.config.default_positive_minimum
  • gpflow.config.default_summary_fmt
  • gpflow.config.set_config
  • gpflow.config.set_default_float
  • gpflow.config.set_default_int
  • gpflow.config.set_default_jitter
  • gpflow.config.set_default_positive_minimum
  • gpflow.config.set_default_summary_fmt
• gpflow.covariances
  • gpflow.covariances.Kuf
  • gpflow.covariances.Kuu
  • gpflow.covariances.kufs
    • gpflow.covariances.kufs.Kuf_conv_patch
    • gpflow.covariances.kufs.Kuf_kernel_inducingpoints
    • gpflow.covariances.kufs.Kuf_sqexp_multiscale
  • gpflow.covariances.kuus
    • gpflow.covariances.kuus.Kuu_conv_patch
    • gpflow.covariances.kuus.Kuu_kernel_inducingpoints
    • gpflow.covariances.kuus.Kuu_sqexp_multiscale
• gpflow.expectations
  • gpflow.expectations.expectation
  • gpflow.expectations.quadrature_expectation
  • gpflow.expectations.expectations
  • gpflow.expectations.quadratures
    • gpflow.expectations.quadratures.get_eval_func
• gpflow.inducing_variables
  • gpflow.inducing_variables.FallbackSeparateIndependentInducingVariables
  • gpflow.inducing_variables.FallbackSharedIndependentInducingVariables
  • gpflow.inducing_variables.InducingPatches
  • gpflow.inducing_variables.InducingPoints
  • gpflow.inducing_variables.InducingVariables
  • gpflow.inducing_variables.MultioutputInducingVariables
  • gpflow.inducing_variables.Multiscale
  • gpflow.inducing_variables.SeparateIndependentInducingVariables
  • gpflow.inducing_variables.SharedIndependentInducingVariables
  • gpflow.inducing_variables.inducing_variables
    • gpflow.inducing_variables.inducing_variables.InducingPointsBase
• gpflow.kernels
  • gpflow.kernels.ArcCosine
  • gpflow.kernels.Constant
  • gpflow.kernels.ChangePoints
  • gpflow.kernels.Combination
  • gpflow.kernels.Convolutional
  • gpflow.kernels.Coregion
  • gpflow.kernels.Cosine
  • gpflow.kernels.Exponential
  • gpflow.kernels.IndependentLatent
  • gpflow.kernels.Kernel
  • gpflow.kernels.Linear
  • gpflow.kernels.LinearCoregionalization
  • gpflow.kernels.Matern12
  • gpflow.kernels.Matern32
  • gpflow.kernels.Matern52
  • gpflow.kernels.MultioutputKernel
  • gpflow.kernels.Periodic
  • gpflow.kernels.Polynomial
  • gpflow.kernels.Product
  • gpflow.kernels.SquaredExponential
  • gpflow.kernels.RationalQuadratic
  • gpflow.kernels.SeparateIndependent
  • gpflow.kernels.SharedIndependent
  • gpflow.kernels.Static
  • gpflow.kernels.Stationary
  • gpflow.kernels.Sum
  • gpflow.kernels.White
• gpflow.kullback_leiblers
  • gpflow.kullback_leiblers.gauss_kl
  • gpflow.kullback_leiblers.prior_kl
• gpflow.likelihoods
  • gpflow.likelihoods.Bernoulli
  • gpflow.likelihoods.Beta
  • gpflow.likelihoods.Exponential
  • gpflow.likelihoods.Gamma
  • gpflow.likelihoods.Gaussian
  • gpflow.likelihoods.GaussianMC
  • gpflow.likelihoods.Likelihood
  • gpflow.likelihoods.MonteCarloLikelihood
  • gpflow.likelihoods.MultiClass
  • gpflow.likelihoods.Ordinal
  • gpflow.likelihoods.Poisson
  • gpflow.likelihoods.RobustMax
  • gpflow.likelihoods.Softmax
  • gpflow.likelihoods.StudentT
  • gpflow.likelihoods.SwitchedLikelihood
  • gpflow.likelihoods.likelihoods
    • gpflow.likelihoods.likelihoods.inv_probit
• gpflow.logdensities
  • gpflow.logdensities.bernoulli
  • gpflow.logdensities.beta
  • gpflow.logdensities.exponential
  • gpflow.logdensities.gamma
  • gpflow.logdensities.gaussian
  • gpflow.logdensities.laplace
  • gpflow.logdensities.lognormal
  • gpflow.logdensities.multivariate_normal
  • gpflow.logdensities.poisson
  • gpflow.logdensities.student_t
• gpflow.mean_functions
  • gpflow.mean_functions.Additive
  • gpflow.mean_functions.Constant
  • gpflow.mean_functions.Identity
  • gpflow.mean_functions.Linear
  • gpflow.mean_functions.MeanFunction
  • gpflow.mean_functions.Product
  • gpflow.mean_functions.SwitchedMeanFunction
  • gpflow.mean_functions.Zero
• gpflow.models
  • gpflow.models.BayesianGPLVM
  • gpflow.models.BayesianModel
  • gpflow.models.GPLVM
  • gpflow.models.GPMC
  • gpflow.models.GPModel
  • gpflow.models.GPR
  • gpflow.models.GPRFITC
  • gpflow.models.SGPMC
  • gpflow.models.SGPR
  • gpflow.models.SGPRUpperMixin
  • gpflow.models.SVGP
  • gpflow.models.VGP
  • gpflow.models.VGPOpperArchambeau
  • gpflow.models.model
  • gpflow.models.util
    • gpflow.models.util.inducingpoint_wrapper
• gpflow.optimizers
  • gpflow.optimizers.NaturalGradient
  • gpflow.optimizers.SamplingHelper
  • gpflow.optimizers.Scipy
  • gpflow.optimizers.XiNat
  • gpflow.optimizers.XiSqrtMeanVar
  • gpflow.optimizers.XiTransform
  • gpflow.optimizers.natgrad
    • gpflow.optimizers.natgrad.expectation_to_meanvarsqrt
    • gpflow.optimizers.natgrad.expectation_to_natural
    • gpflow.optimizers.natgrad.meanvarsqrt_to_expectation
    • gpflow.optimizers.natgrad.meanvarsqrt_to_natural
    • gpflow.optimizers.natgrad.natural_to_expectation
    • gpflow.optimizers.natgrad.natural_to_meanvarsqrt
    • gpflow.optimizers.natgrad.swap_dimensions
• gpflow.probability_distributions
  • gpflow.probability_distributions.DiagonalGaussian
  • gpflow.probability_distributions.Gaussian
  • gpflow.probability_distributions.MarkovGaussian
  • gpflow.probability_distributions.ProbabilityDistribution
• gpflow.quadrature
  • gpflow.quadrature.hermgauss
  • gpflow.quadrature.mvhermgauss
  • gpflow.quadrature.mvnquad
  • gpflow.quadrature.ndiag_mc
  • gpflow.quadrature.ndiagquad
• gpflow.utilities
  • gpflow.utilities.deepcopy_components
  • gpflow.utilities.leaf_components
  • gpflow.utilities.multiple_assign
  • gpflow.utilities.parameter_dict
  • gpflow.utilities.positive
  • gpflow.utilities.print_summary
  • gpflow.utilities.read_values
  • gpflow.utilities.set_trainable
  • gpflow.utilities.to_default_float
  • gpflow.utilities.to_default_int
  • gpflow.utilities.training_loop
  • gpflow.utilities.bijectors
  • gpflow.utilities.ops
    • gpflow.utilities.ops.add_to_diagonal
    • gpflow.utilities.ops.broadcasting_elementwise
    • gpflow.utilities.ops.eye
    • gpflow.utilities.ops.pca_reduce
    • gpflow.utilities.ops.square_distance
  • gpflow.utilities.utilities
    • gpflow.utilities.utilities.reset_cache_bijectors
    • gpflow.utilities.utilities.tabulate_module_summary
    • gpflow.utilities.utilities.traverse_module